Petras Kundrotas

Professor at Biology, University of Kansas0 Followers

Dr. Petras Kundrotas specializes in the field of biology and holds the position of Associate Research Professor at the Biology University of Kansas, located in Lawrence, KS. With a strong foundation in biological sciences, Dr. Kundrotas contributes to the academic community through his research and teaching. His work at the university involves engaging with students and colleagues to explore various aspects of biology, although his specific research interests remain unspecified. Dr. Kundrotas is committed to advancing knowledge in his field and fostering an environment of learning and discovery.

Research Interests

Molecular biology cellular biology genetics bioinformatics

Publications

1 - Limits and potential of combined folding and docking,Bioinformatics

Gabriele Pozzati , Wensi Zhu , Claudio Bassot , John Lamb , Petras Kundrotas , Arne Elofsson ,

, 954-961, 2021-11-12

2 - Text mining for modeling of protein complexes enhanced by machine learning,Bioinformatics

Varsha D Badal , Petras J Kundrotas , Ilya A Vakser ,

, 497-505, 2020-09-22

3 - Structural quality of unrefined models in protein docking,Proteins: Structure, Function, and Bioinformatics

Ivan Anishchenko , Petras J. Kundrotas , Ilya A. Vakser ,

, 39-45, 2016-11-13

4 - Structural motifs in protein cores and at protein–protein interfaces are different,Protein Science

Anna Hadarovich , Devlina Chakravarty , Alexander V. Tuzikov , Nir Ben‐Tal , Petras J. Kundrotas , Ilya A. Vakser ,

, 381-390, 2020-11-20

5 - How to choose templates for modeling of protein complexes: Insights from benchmarking template‐based docking,Proteins: Structure, Function, and Bioinformatics

Devlina Chakravarty , GW McElfresh , Petras J. Kundrotas , Ilya A. Vakser ,

, 1070-1081, 2020-02-07

6 - Evaluation of AlphaFold-Multimer prediction on multi-chain protein complexes,

Wensi Zhu , Aditi Shenoy , Petras Kundrotas , Arne Elofsson ,

, 2022-12-12

7 - Limits and potential of combined folding and docking using PconsDock,

Gabriele Pozzati , Wensi Zhu , Claudio Bassot , John Lamb , Petras Kundrotas , Arne Elofsson ,

, 2021-06-07

8 - Dockground: A comprehensive data resource for modeling of protein complexes,Protein Science

Petras J. Kundrotas , Ivan Anishchenko , Taras Dauzhenka , Ian Kotthoff , Daniil Mnevets , Matthew M. Copeland , Ilya A. Vakser ,

, 172-181, 2017-10-10

9 - Templates are available to model nearly all complexes of structurally characterized proteins,Proceedings of the National Academy of Sciences

Petras J. Kundrotas , Zhengwei Zhu , Joël Janin , Ilya A. Vakser ,

, 9438-9441, 2012-05-29

10 - ASSESSING THE QUALITY OF THE HOMOLOGY-MODELED 3D STRUCTURES FROM ELECTROSTATIC STANDPOINT: TEST ON BACTERIAL NUCLEOSIDE MONOPHOSPHATE KINASE FAMILIES,Journal of Bioinformatics and Computational Biology

PETRAS KUNDROTAS , PAULINA GEORGIEVA , ALEXANDRA SHOSHEVA , PETYA CHRISTOVA , EMIL ALEXOV ,

, 693-715, 2007-06-01

11 - Dockground resource for protein recognition studies,Protein Science

Keeley W. Collins , Matthew M. Copeland , Ian Kotthoff , Amar Singh , Petras J. Kundrotas , Ilya A. Vakser ,

, 2022-11-16

12 - Application of docking methodologies to modeled proteins,Proteins: Structure, Function, and Bioinformatics

Amar Singh , Taras Dauzhenka , Petras J. Kundrotas , Michael J. E. Sternberg , Ilya A. Vakser ,

, 1180-1188, 2020-03-20

13 - Global and local structural similarity in protein–protein complexes: Implications for template‐based docking,Proteins: Structure, Function, and Bioinformatics

Petras J. Kundrotas , Ilya A. Vakser ,

, 2137-2142, 2013-10-17

14 - Dockground scoring benchmarks for protein docking,

Ian Kotthoff , Petras J. Kundrotas , Ilya A. Vakser ,

, 2021-09-04

15 - Dockground scoring benchmarks for protein docking,Proteins: Structure, Function, and Bioinformatics

Ian Kotthoff , Petras J. Kundrotas , Ilya A. Vakser ,

, 1259-1266, 2022-02-05

16 - Computational Feasibility of an Exhaustive Search of Side‐Chain Conformations in Protein‐Protein Docking,Journal of Computational Chemistry

Taras Dauzhenka , Petras J. Kundrotas , Ilya A. Vakser ,

, 2012-2021, 2018-09-15

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